Bioinformatics

Omics technologies are paramount in modern academic research and biotechnology sector and generate enormous throughput data of high quality. As these technologies continue to evolve with the increasing implementation of multiomics studies, accurately integrating and interpreting complex data sets from omics experiments also becomes increasingly important. There is a growing need for customized and innovative data analysis workflows to maximize insights from multi-omics analysis. Our end-to-end collaboration will chaperone your research from unraveling novel pathways to predicting gene function. We will work closely to construct custom workflows suited for your experiments that ensure data reproducibility.

Whole Genome Sequencing (WGS) / Whole Exome Sequencing (WES) data

We can develop comprehensive study design, process and analyze raw data and generate in-depth data interpretation including variant calling, pathway analysis and functional enrichments.

RNA-seq data

We regularly perform differential expression analysis from transcriptome studies across a range of species and tissues. We also have excellent expertise in de novo transcriptome assembly for non-model organism.

Single-cell RNA-seq data

Single-cell RNA-seq is one of the rapidly progressive field. We have thorough expertise in analyzing scRNA-seq data from a range of technologies including 10x Genomics, ddSEQ, SMART-Seq and more.

Proteomics data

We bring strong expertise in proteomics studies spanning diverse experimental systems, including host-infection models, microbial cultures, co-culture experiments, secretome profiling, extracellular vesicles (EVs), and related applications.

Collaborative framework

Data analysis: We will develop tailored bioinformatics workflows, including custom code, and provide all pipelines to your team for future implementation to ensure reproducibility and long-term usability. Beyond analysis, we will work closely with your group on biological interpretation and provide substantive intellectual contributions throughout the project.

Active updates: We provide regular updates on the progress of data analysis and interpretation through email or video calls, ensuring seamless coordination with ongoing experimental work. For instance, if a specific gene shows significant regulation, we will promptly communicate this information, enabling you to take swift action, such as ordering primers or preparing gene knockout experiments. Time is of essence!

Publication support: At the conclusion of the analysis, we provide comprehensive reports detailing key results, methods, and references. When preparing manuscripts, we can integrate bioinformatics-specific data, methodological descriptions, and analyses, and support addressing reviewer comments post-submission.

Consultation: We collaborate with research teams in planning future multiomics projects, including experimental design and data analysis workflows. In partnership with our collaborators, we provide access to a range of omics approaches, including sequencing and proteomics, and support integration of these approaches into grant proposals and project planning.